Emek Demir: search on Z-Library

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1

Determination of essential and non-essential element concentrations and health risk assessment of some commercial fruit juices in Turkey

Demir, Funda, Kipcak, Azmi Seyhun, Dere Ozdemir, Ozgul, Moroydor Derun, Emek

Journal:

Journal of Food Science and Technology

Year:

2020

File:

PDF, 413 KB

2020

2

The Systems Biology Graphical Notation

Novère, Nicolas Le, Hucka, Michael, Mi, Huaiyu, Moodie, Stuart, Schreiber, Falk, Sorokin, Anatoly, Demir, Emek, Wegner, Katja, Aladjem, Mirit I, Wimalaratne, Sarala M

Journal:

Nature Biotechnology

Year:

2009

Language:

english

File:

PDF, 1.03 MB

english, 2009

3

LibSBGN: Electronic Processing of SBGN maps

Demir, Emek, Dogrusoz, Ugur, Le Novère, Nicolas, Matsuoka, Yukiko, Sorokin, Anatoly, Funahashi, Akira, Mi, Huaiyu, Kitano, Hiroaki, Aladjem, Mirit, van Iersel, Martijn, Blinov, Michael, Boyd, Sarah, V

Journal:

Bioentrepreneur

Year:

2010

File:

PDF, 1.38 MB

2010

4

Systems Biology Graphical Notation: Entity Relationship language Level 1 Version 2

Sorokin, Anatoly, Le Novère, Nicolas, Luna, Augustin, Czauderna, Tobias, Demir, Emek, Haw, Robin, Mi, Huaiyu, Moodie, Stuart, Schreiber, Falk, Villéger, Alice

Journal:

Journal of Integrative Bioinformatics

Year:

2015

Language:

english

File:

PDF, 2.53 MB

english, 2015

5

Corrigendum: The BioPAX community standard for pathway data sharing

Demir, Emek, Cary, Michael P, Paley, Suzanne, Fukuda, Ken, Lemer, Christian, Vastrik, Imre, Wu, Guanming, D'Eustachio, Peter, Schaefer, Carl, Luciano, Joanne, Schacherer, Frank, Martinez-Flores, Irma,

Journal:

Nature Biotechnology

Year:

2012

Language:

english

File:

PDF, 60 KB

english, 2012

6

Erratum: The Systems Biology Graphical Notation

Le Novère, Nicolas, Hucka, Michael, Mi, Huaiyu, Moodie, Stuart, Schreiber, Falk, Sorokin, Anatoly, Demir, Emek, Wegner, Katja, Aladjem, Mirit I, Wimalaratne, Sarala M

Journal:

Nature Biotechnology

Year:

2009

Language:

english

File:

PDF, 65 KB

english, 2009

7

Association between seroprevalence of measles and various social determinants in the year following a measles outbreak in Turkey

Emek, M., Islek, D., Atasoylu, G., Ozbek, O.A., Ceylan, A., Acikgoz, A., Tay, Z., Demiral, Y., Oktem, M.A., Unal, B.

Journal:

Year:

2017

Language:

english

File:

PDF, 347 KB

english, 2017

8

The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution

Rozenblatt-Rosen, Orit, Regev, Aviv, Oberdoerffer, Philipp, Nawy, Tal, Hupalowska, Anna, Rood, Jennifer E., Ashenberg, Orr, Cerami, Ethan, Coffey, Robert J., Demir, Emek, Ding, Li, Esplin, Edward D.,

Journal:

Year:

2020

File:

PDF, 2.79 MB

2020

9

Systems Biology Graphical Notation: Process Description language Level 1

Moodie, Stuart, Le Novere, Nicolas, Demir, Emek, Mi, Huaiyu, Schreiber, Falk

Journal:

Nature Precedings

Year:

2010

Language:

english

File:

PDF, 1.75 MB

english, 2010

10

Turkish elementary school students’ performance on integrated science process skills

Emek Aydinli, I. Dokme, Z.K. Ünlüa, N. Öztürk, R. Demir, E. Benli

Journal:

Procedia - Social and Behavioral Sciences

Year:

2011

Language:

english

File:

PDF, 462 KB

english, 2011

11

Crosstalk between Signaling Pathways Provided by Single and Multiple Protein Phosphorylation Sites

Nishi, Hafumi, Demir, Emek, Panchenko, Anna R.

Journal:

Journal of Molecular Biology

Year:

2015

Language:

english

File:

PDF, 628 KB

english, 2015

12

Response surface methodology application to fly ash based geopolymer synthesized by alkali fusion method

Demir, Funda, Moroydor Derun, Emek

Journal:

Journal of Non-Crystalline Solids

Year:

2019

Language:

english

File:

PDF, 1.81 MB

english, 2019

13

Meeting report from the first meetings of the Computational Modeling in Biology Network (COMBINE)

Le Novère, Nicolas, Hucka, Michael, Anwar, Nadia, Bader, Gary D, Demir, Emek, Moodie, Stuart, Sorokin, Anatoly

Journal:

Standards in Genomic Sciences

Year:

2011

Language:

english

File:

PDF, 277 KB

english, 2011

14

Automated Network Analysis Identifies Core Pathways in Glioblastoma

Cerami, Ethan, Demir, Emek, Schultz, Nikolaus, Taylor, Barry S., Sander, Chris, Hannenhalli, Sridhar

Journal:

Year:

2010

Language:

english

File:

PDF, 2.14 MB

english, 2010

15

Is There any Association between Urothelial Carcinoma of the Bladder and Human Papillomavirus? A Case-Control Study

Sarier, Mehmet, Sepin, Nevgun, Keles, Yildiz, Imir, Levent, Emek, Mestan, Demir, Meltem, Kukul, Erdal, Soylu, Ahmet

Journal:

Urologia Internationalis

Year:

2019

Language:

english

File:

PDF, 118 KB

english, 2019

16

The BioPAX community standard for pathway data sharing

Demir, Emek, Cary, Michael P, Paley, Suzanne, Fukuda, Ken, Lemer, Christian, Vastrik, Imre, Wu, Guanming, D'Eustachio, Peter, Schaefer, Carl, Luciano, Joanne

Journal:

Nature Biotechnology

Year:

2010

Language:

english

File:

PDF, 98 KB

english, 2010

17

LibSBGN: Electronic Processing of SBGN maps

Demir, Emek, Dogrusoz, Ugur, Le Novère, Nicolas, Matsuoka, Yukiko, Sorokin, Anatoly, Funahashi, Akira, Mi, Huaiyu, Kitano, Hiroaki, Aladjem, Mirit, van Iersel, Martijn, Blinov, Michael, Boyd, Sarah, V

Journal:

Bioentrepreneur

Year:

2011

File:

PDF, 1.40 MB

2011

18

Newt: a comprehensive web-based tool for viewing, constructing, and analyzing biological maps

Balci, Hasan, Siper, Metin Can, Saleh, Nasim, Safarli, Ilkin, Roy, Ludovic, Kilicarslan, Merve, Ozaydin, Rumeysa, Mazein, Alexander, Auffray, Charles, Babur, ÃzgÃ¼n, Demir, Emek, Dogrusoz, Ugur, Wren

Journal:

Year:

2020

File:

PDF, 260 KB

2020

19

Systems Biology Graphical Notation: Activity Flow language Level 1 Version 1.2

Mi, Huaiyu, Schreiber, Falk, Moodie, Stuart, Czauderna, Tobias, Demir, Emek, Haw, Robin, Luna, Augustin, Le Novère, Nicolas, Sorokin, Anatoly, Villéger, Alice

Journal:

Journal of Integrative Bioinformatics

Year:

2015

Language:

english

File:

PDF, 1.45 MB

english, 2015

20

The Pathologic Spectrum of Prolapsus Uteri: Histopathologic Evaluation of Hysterectomy Specimens

Müezzinoĝlu, Bahar, Doĝer, Emek, Yildiz, Demir Kürşat

Journal:

Journal of Gynecologic Surgery

Year:

2005

Language:

english

File:

PDF, 42 KB

english, 2005

21

PaxtoolsR: Pathway Analysis in R Using Pathway Commons

Luna, Augustin, Babur, Özgün, Aksoy, Bülent Arman, Demir, Emek, Sander, Chris

Journal:

Year:

2015

Language:

english

File:

PDF, 302 KB

english, 2015

22

Systems Biology Graphical Notation: Process Description language Level 1

Moodie, Stuart, Le Novere, Nicolas, Demir, Emek, Mi, Huaiyu, Schreiber, Falk

Journal:

Nature Precedings

Year:

2010

File:

PDF, 1.75 MB

2010

23

New approach to microscopy of Gram-stained urethral smear

Sarier, Mehmet, Demir, Meltem, Turgut, Hasan, Hizel, Aydan, Emek, Mestan, Kukul, Erdal, Sepin, Nevgun

Journal:

Sexually Transmitted Diseases

Year:

2020

File:

PDF, 177 KB

2020

24

Promoting Coordinated Development of Community-Based Information Standards for Modeling in Biology: The COMBINE Initiative

Hucka, Michael, Nickerson, David P., Bader, Gary D., Bergmann, Frank T., Cooper, Jonathan, Demir, Emek, Garny, Alan, Golebiewski, Martin, Myers, Chris J., Schreiber, Falk, Waltemath, Dagmar, Le NovÃ¨r

Journal:

Frontiers in Bioengineering and Biotechnology

Year:

2015

Language:

english

File:

PDF, 453 KB

english, 2015

25

[IEEE 2017 Medical Technologies National Congress (TIPTEKNO) - Trabzon (2017.10.12-2017.10.14)] 2017 Medical Technologies National Congress (TIPTEKNO) - Exploration of gender differences on attention levels with cancellation tests

Guven, Aysegul, Batbat, Turgay, Emekli, Nazan Dolu, Demir, Mahir

Year:

2017

Language:

turkish

File:

PDF, 354 KB

turkish, 2017

26

1P271 Crosstalk between signaling pathways revealed by database analysis of human phosphorylation sites(22B. Bioinformatics: Functional genomics,Poster)

Nishi, Hafumi, Demir, Emek, Panchenko, Anna R.

Journal:

Seibutsu Butsuri

Year:

2013

Language:

english

File:

PDF, 692 KB

english, 2013

27

Platelet procoagulant phenotype is modulated by a p38-MK2 axis that regulates RTN4/Nogo proximal to the endoplasmic reticulum: utility of pathway analysis

Babur, Özgün, Ngo, Anh T. P., Rigg, Rachel A., Pang, Jiaqing, Rub, Zhoe T., Buchanan, Ariana E., Mitrugno, Annachiara, David, Larry L., McCarty, Owen J. T., Demir, Emek, Aslan, Joseph E.

Journal:

American journal of physiology. Cell physiology

Year:

2018

Language:

english

File:

PDF, 4.74 MB

english, 2018

28

Large-scale automated machine reading discovers new cancer-driving mechanisms

Valenzuela-Escárcega, Marco A, Babur, Özgün, Hahn-Powell, Gus, Bell, Dane, Hicks, Thomas, Noriega-Atala, Enrique, Wang, Xia, Surdeanu, Mihai, Demir, Emek, Morrison, Clayton T

Journal:

Year:

2018

Language:

english

File:

PDF, 7.15 MB

english, 2018

29

Cancer-associated mutations in DICER1 RNase IIIa and IIIb domains exert similar effects on miRNA biogenesis

Vedanayagam, Jeffrey, Chatila, Walid K., Aksoy, Bülent Arman, Majumdar, Sonali, Skanderup, Anders Jacobsen, Demir, Emek, Schultz, Nikolaus, Sander, Chris, Lai, Eric C.

Journal:

Nature Communications

Year:

2019

Language:

english

File:

PDF, 1.50 MB

english, 2019

30

Algorithms for effective querying of compound graph-based pathway databases

Ugur Dogrusoz, Ahmet Cetintas, Emek Demir, Ozgun Babur

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 2.24 MB

english, 2009

31

Microscopy of Gram-stained urethral smear in the diagnosis of urethritis: Which threshold value should be selected?

Sarier, Mehmet, Sepin, Nevgun, Duman, Ibrahim, Demir, Meltem, Hizel, Aydan, Göktaş, Şafak, Emek, Mestan, Kukul, Erdal, Soylu, Ahmet

Journal:

Year:

2018

Language:

english

File:

PDF, 382 KB

english, 2018

32

Systems Biology Graphical Notation: Process Description language Level 1

Moodie, Stuart, Le Novere, Nicolas, Demir, Emek, Mi, Huaiyu, Schreiber, Falk

Journal:

Bioentrepreneur

Year:

2011

Language:

english

File:

PDF, 1.75 MB

english, 2011

33

Systems Biology Graphical Notation: Process Description language Level 1

Moodie, Stuart, Le Novere, Nicolas, Demir, Emek, Mi, Huaiyu, Villeger, Alice

Journal:

Bioentrepreneur

Year:

2011

Language:

english

File:

PDF, 1.75 MB

english, 2011

34

A layout algorithm for undirected compound graphs

Ugur Dogrusoz, Erhan Giral, Ahmet Cetintas, Ali Civril, Emek Demir

Journal:

Information Sciences

Year:

2009

Language:

english

File:

PDF, 1.26 MB

english, 2009

35

THE NEW CUT-OFF FOR CEREBROSPINAL FLUID BIOMARKER OF ALZHEIMER'S DISEASE IN THE DIFFERENTIATION BETWEEN FTLD AND CONTROL SUBJECTS FOR A TURKISH POPULATION

Eren, Erden, Keskinoglu, Pembe, Tufekci, Kemal Ugur, Gökçe, Gülsah, Tanburoglu, Anil, Demir, Nurhak, Emek-Savas, Derya Durusu, Yener, Görsev G., Genç, Åžermin

Journal:

Alzheimer's & Dementia

Year:

2014

Language:

english

File:

PDF, 79 KB

english, 2014

36

Approach to pre-analytical errors in a public health laboratory

Avcı, Esin, Çeken, Nihan, Kangal, Zeliha, Demir, Süleyman, Emekli, Dilek İren, Zorbozan, Nergiz

Journal:

Turkish Journal of Biochemistry

Year:

2017

File:

PDF, 189 KB

2017

37

Systematic identification of cancer driving signaling pathways based on mutual exclusivity of genomic alterations

Babur, Özgün, Gönen, Mithat, Aksoy, Bülent Arman, Schultz, Nikolaus, Ciriello, Giovanni, Sander, Chris, Demir, Emek

Journal:

Year:

2015

Language:

english

File:

PDF, 776 KB

english, 2015

38

Impact of reaction variables and PEI/l-cysteine ratio on optical properties and cytocompatibility of cationic Ag2S quantum dots as NIR bio-imaging probes

DEMİR, FATMA, Khodadust, Rouhollah, DURMUSOGLU, EMEK GOKSU, YAGCI, MUSTAFA BARIS, YAGCI ACAR, HAVVA

Journal:

Year:

2016

Language:

english

File:

PDF, 2.79 MB

english, 2016

39

Systems Biology Graphical Notation: Entity Relationship language Level 1 (Version 1.2)

Le Novere, Nicolas, Demir, Emek, Mi, Huaiyu, Moodie, Stuart, Villeger, Alice

Journal:

Bioentrepreneur

Year:

2011

Language:

english

File:

PDF, 858 KB

english, 2011

40

LibSBGN: Electronic Processing of SBGN maps

Demir, Emek, Dogrusoz, Ugur, Le Novère, Nicolas, Matsuoka, Yukiko, Sorokin, Anatoly, Funahashi, Akira, Mi, Huaiyu, Kitano, Hiroaki, Aladjem, Mirit, van Iersel, Martijn, Blinov, Michael, Boyd, Sarah, V

Journal:

Bioentrepreneur

Year:

2010

Language:

english

File:

PDF, 1.38 MB

english, 2010

41

Using Biological Pathway Data with Paxtools

Demir, Emek, Babur, Özgün, Rodchenkov, Igor, Aksoy, Bülent Arman, Fukuda, Ken I., Gross, Benjamin, Sümer, Onur Selçuk, Bader, Gary D., Sander, Chris, Prlic, Andreas

Journal:

PLoS Computational Biology

Year:

2013

Language:

english

File:

PDF, 449 KB

english, 2013

42

MAGNETIC RESONANCE IMAGING VOLUMETRIC ANALYSES IN EARLY ONSET ALZHEIMER DEMENTIA AND FRONTOTEMPORAL DEMENTIA SUBJECTS

Yener, Görsev G., Gökçe, Gülşah, Tanburoğlu, Anil, Çavuşoğlu, Berrin, Demir, Nurhak, Emek-Savaş, Derya Durusu, Ada, Emel

Journal:

Alzheimer's & Dementia

Year:

2014

Language:

english

File:

PDF, 159 KB

english, 2014

43

Systems Biology Graphical Notation: Process Description language Level 1

Moodie, Stuart, Le Novere, Nicolas, Demir, Emek, Mi, Huaiyu, Schreiber, Falk

Journal:

Bioentrepreneur

Year:

2011

File:

PDF, 1.75 MB

2011

44

Altered Biochemical Parameters in the Saliva of Patients with Breast Cancer

Emekli-Alturfan, Ebru, Demir, Gokhan, Kasikci, Emel, Tunali-Akbay, Tugba, Pisiriciler, Rabia, Caliskan, Esin, Yarat, Aysen

Journal:

The Tohoku Journal of Experimental Medicine

Year:

2008

Language:

english

File:

PDF, 835 KB

english, 2008

45

Systems Biology Graphical Notation: Process Description language Level 1

Moodie, Stuart, Le Novere, Nicolas, Demir, Emek, Mi, Huaiyu, Villeger, Alice

Journal:

Bioentrepreneur

Year:

2011

File:

PDF, 1.75 MB

2011

46

PATIKAmad: Putting microarray data into pathway context

Ozgun Babur, Recep Colak, Emek Demir, Ugur Dogrusoz

Journal:

Year:

2008

Language:

english

File:

PDF, 256 KB

english, 2008

47

Systems Biology Graphical Notation: Process Description language Level 1 Version 1.3

Moodie, Stuart, Le Novère, Nicolas, Demir, Emek, Mi, Huaiyu, Villéger, Alice

Journal:

Journal of Integrative Bioinformatics

Year:

2015

Language:

english

File:

PDF, 1.73 MB

english, 2015

48

LibSBGN: Electronic Processing of SBGN maps

Demir, Emek, Dogrusoz, Ugur, Le Novère, Nicolas, Matsuoka, Yukiko, Sorokin, Anatoly, Funahashi, Akira, Mi, Huaiyu, Kitano, Hiroaki, Aladjem, Mirit, van Iersel, Martijn, Blinov, Michael, Boyd, Sarah, V

Journal:

Bioentrepreneur

Year:

2011

Language:

english

File:

PDF, 1.40 MB

english, 2011

49

Systems Biology Graphical Notation: Entity Relationship language Level 1 (Version 1.2)

Le Novere, Nicolas, Demir, Emek, Mi, Huaiyu, Moodie, Stuart, Villeger, Alice

Journal:

Bioentrepreneur

Year:

2011

File:

PDF, 858 KB

2011

50

Usage of gold mine tailings based geopolymer on Cu2+ adsorption from water

Demir, Funda, Moroydor Derun, Emek

Journal:

Main Group Chemistry

Year:

2019

File:

PDF, 884 KB

2019

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